PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026599m
Common NameCARUB_v10026599mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 378aa    MW: 41699.5 Da    PI: 4.7692
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026599mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.8e-31189247259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+geH+h+
  Carubv10026599m 189 SDMWAWRKYGQKPIKGSPYPRNYYRCSSSkGCLARKQVERSNLDPNIFIVTYTGEHTHP 247
                      79*************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-31175249IPR003657WRKY domain
SuperFamilySSF1182904.84E-27181249IPR003657WRKY domain
PROSITE profilePS5081133.281183249IPR003657WRKY domain
SMARTSM007746.1E-39188248IPR003657WRKY domain
PfamPF031063.3E-26190247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSSDDWDLNA VVRSCSSSVS TATTINTNPC IGHEEDDGGN CKQQQDPPLP PPSPLFTHIH  60
GDRETSSSCN ELQDSCKPFL PVTTTTTTTW SPPPLLPPSL ASSSAPNVLM KQEQVHHLES  120
SSSSQDHQKP PLGVRVFPPS TSSSSSVFVF RGQRDQLLQQ QSQPPLRSRK RKNQQKRTIC  180
HVTQENLSSD MWAWRKYGQK PIKGSPYPRN YYRCSSSKGC LARKQVERSN LDPNIFIVTY  240
TGEHTHPRPT HRNSLAGSTR NKSQHVNPIP KPDSSSGQTV LGSNTVKDEI HLSPTTPLKG  300
NDDVRGTNGD EDMMSQEVNM DEEEEEEEEE EVEEEDDEDD DVDDILIPNL AVRDRDDLFF  360
AGNFSSWSAG SAGDGGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-18177249274WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280638.10.0hypothetical protein CARUB_v10026599mg
SwissprotQ9FLX81e-148WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLR0EXF50.0R0EXF5_9BRAS; Uncharacterized protein
STRINGAT5G52830.11e-146(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-122WRKY DNA-binding protein 27